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Pipelines

Current pipelines at NWGC:

PIPELINE ALIGNER VARIANT CALLERS DELIVERABLES
AoU srWGS Dragen Dragen Annotated VCF, CRAMs
AoU LR Ont MM2 Clair3, Sniffles2 VCFs and BAMs
AoU LR PB PBMM2 Clair3, PBSV, Sniffles2 VCFs and BAMs
TOPMed RNA-Seq STAR RSEM, RNA-SeqQC Gene and isoform expression counts, BAMs
srWGS, WXS, Custom capture BWA-Mem GATK Annotated VCF, CRAMs

All Already Prepared Libraries submitted for sequencing only will be delivered as FASTQs or raw data (BCLs, etc) can be requested for a fee.