Current pipelines at NWGC:
| PIPELINE | ALIGNER | VARIANT CALLERS | DELIVERABLES |
| AoU srWGS | Dragen | Dragen | Annotated VCF, CRAMs |
| AoU LR Ont | MM2 | Clair3, Sniffles2 | VCFs and BAMs |
| AoU LR PB | PBMM2 | Clair3, PBSV, Sniffles2 | VCFs and BAMs |
| TOPMed RNA-Seq | STAR | RSEM, RNA-SeqQC | Gene and isoform expression counts, BAMs |
| srWGS, WXS, Custom capture | BWA-Mem | GATK | Annotated VCF, CRAMs |
All Already Prepared Libraries submitted for sequencing only will be delivered as FASTQs or raw data (BCLs, etc) can be requested for a fee.